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Instructor-led Classroom Adult Training in Singapore - Modular Fast Track Skill-Based Trainings

R Bioconductor Training for Bioinformatics

Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is based primarily on the statistical R programming language,

Course Highlights

  • Sequencing Using Bioconductor
  • Extract Data from NCBI
  • Databases in Bioconductor
  • DNS Microarray

Certificate

All participants will receive a Certificate of Completion from Tertiary Courses after achieved at least 75% attendance.

Funding and Grant Applications

Click the links below to apply. Note that you need to register the course first.

For Singaporeans: SkillsFuture Credit

For Company: SSG Training Grant

Course Code: CRS-N-0035288

Course Booking

$298.00 (GST-exclusive)
$318.86(GST-inclusive)

Course Date

Course Time

* Required Fields

Course Cancellation/Reschedule Policy

We reserve the right to cancel or re-schedule the course due to unforeseen circumstances. If the course is cancelled, we will refund 100% to participants.
Note the venue of the training is subject to changes due to class size and availability of the classroom.
Note the minimal class size to start a class is 3 Pax.


Course Details

Module 1 : Introduction to bioinformatics

  1. What is bioinformatics
  2. Types of online databases and online tools
  3. Genomics resources
  4. Protenomics resources

Module 2 : Introduction to bioConductor

  • BioConductor Website
  • installing BioConductor in R
  • Bioconductor packages, vignettes, tutorials
  • Bioconductor datasets(biocViews)

Module 3 : Databases in BioConductor

  • Annotation Hub
  • biomarts (online biomarts)
  • Genomic (full genomes)
  • GEOquery (NCBI Gene expression Omnibus) & ArrayExpress
  • KEGG (Kyto Encyclopedia for Genes and Genomes)
  • Gene libraries

Module 4 : Data files in BioConductor

  • Data containers
  • Importing data types
  • Downloading DNA
  • Manipulating DNA

Module 5: DNA Blast

  • NCBI blast 
  • Gene sequence blast
  • Protein blast

Module 6 : Ranges into BioConductor

  • Iranges
  • Granges
  • Granges plotting
  • Granges w genes

Module 7: Visualizing Data in BioConductor

  • Visualizing genomic features
  • Visualizing DNA content
  • Visualizing gene expression

Course Admin

Prerequisite

This is an intermediate course. the following basic knowledge is assumed

Software Requirement

Please download and install the following software prior to the class

Who Should Attend

  • Life Science Workers
  • Bioinformatics Analysts

Trainers

BioinformaticeTrainerDr Brandon Ooi has a Bachelors degree in Computer Engineering and a PhD in Bioengineering from the National University of Singapore. He has published papers on machine learning, bioinformatics and microarray data analysis. He has six years of teaching experience at the polytechnic level and was also involved in the creation and teaching of modules for adult learners.

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. (Posted on 7/24/2018)
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More grounded in biology (Posted on 12/20/2016)

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